PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon19146413_o.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 89aa MW: 10424.6 Da PI: 9.7512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.4 | 3.5e-20 | 6 | 79 | 55 | 128 |
NAM 55 ekewyfFskrdkkyat..gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ewyfFs+r k+++ +++ nr+t++g Wk++g+d++++ + +++++g k++L+fy p+ +ktdWv+hey l FANhyb_icon19146413_o.1.g00001.1 6 DMEWYFFSPRVFKHSNskSSKINRTTDEGSWKKQGNDRRITGAfSDKQIGGKRILTFY---LPNKQKTDWVIHEYYL 79 679*******8887752267999******************9999999**********...678899********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.818 | 1 | 89 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-12 | 5 | 78 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.26E-19 | 5 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MADSPDMEWY FFSPRVFKHS NSKSSKINRT TDEGSWKKQG NDRRITGAFS DKQIGGKRIL 60 TFYLPNKQKT DWVIHEYYLT KADSDEQIG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468876.1 | 1e-57 | PREDICTED: NAC domain-containing protein 4-like isoform X1 | ||||
Refseq | XP_011468877.1 | 1e-57 | PREDICTED: NAC domain-containing protein 4-like isoform X2 | ||||
TrEMBL | A0A2P6SC50 | 5e-47 | A0A2P6SC50_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004308270.1 | 1e-53 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14450 | 5 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 9e-18 | NAC domain containing protein 28 |