PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon19146413_o.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 89aa    MW: 10424.6 Da    PI: 9.7512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon19146413_o.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.5e-2067955128
                               NAM  55 ekewyfFskrdkkyat..gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       + ewyfFs+r  k+++  +++ nr+t++g Wk++g+d++++ + +++++g k++L+fy    p+ +ktdWv+hey l
  FANhyb_icon19146413_o.1.g00001.1   6 DMEWYFFSPRVFKHSNskSSKINRTTDEGSWKKQGNDRRITGAfSDKQIGGKRILTFY---LPNKQKTDWVIHEYYL 79 
                                       679*******8887752267999******************9999999**********...678899********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.818189IPR003441NAC domain
PfamPF023653.3E-12578IPR003441NAC domain
SuperFamilySSF1019411.26E-19584IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MADSPDMEWY FFSPRVFKHS NSKSSKINRT TDEGSWKKQG NDRRITGAFS DKQIGGKRIL  60
TFYLPNKQKT DWVIHEYYLT KADSDEQIG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468876.11e-57PREDICTED: NAC domain-containing protein 4-like isoform X1
RefseqXP_011468877.11e-57PREDICTED: NAC domain-containing protein 4-like isoform X2
TrEMBLA0A2P6SC505e-47A0A2P6SC50_ROSCH; Putative transcription factor NAM family
STRINGXP_004308270.11e-53(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14450518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.19e-18NAC domain containing protein 28