PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00050360_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 47aa    MW: 5293.45 Da    PI: 10.9032
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00050360_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.1e-22947139
                                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                                      k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ v+i
  FANhyb_icon00050360_a.1.g00001.1  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLI 47
                                      78*********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-21147IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-21147IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.034147IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-21323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-201047IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-213847IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 47 aa     Download sequence    Send to blast
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301468.17e-26PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ2QW555e-24MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A2P6PFG95e-25A0A2P6PFG9_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004301468.13e-25(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-26AGAMOUS-like 12