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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00043757_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 93aa MW: 10491 Da PI: 10.9781 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.5 | 8.4e-07 | 51 | 82 | 5 | 38 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-S CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKl 38 h ++Er RR++ +++++ L +llP+ +s K+ FANhyb_icon00043757_a.1.g00001.1 51 HMINERMRREKQKQGYFALHSLLPNgT---KSDKN 82 7899*********************55...55443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-8 | 39 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.588 | 46 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-5 | 51 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
APRLCKPPNP GSNSMSVSKR MVQFLRNSCP SSTAKTDAGE KEHGKEKGFR HMINERMRRE 60 KQKQGYFALH SLLPNGTKSD KNRIVQVATT TYV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288441.1 | 2e-55 | PREDICTED: transcription factor bHLH92 | ||||
Swissprot | Q9FIX5 | 3e-16 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | A0A2P6QQ86 | 2e-41 | A0A2P6QQ86_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004288441.1 | 9e-55 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 1e-18 | bHLH family protein |
Publications ? help Back to Top | |||
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