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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00043296_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 93aa MW: 10718.1 Da PI: 4.8405 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.7 | 8.2e-18 | 48 | 93 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lp+GfrFhPt+eel+++yLkkk++g++++ vi+e+di+++ePwdLp FANhyb_icon00043296_a.1.g00001.1 48 LPVGFRFHPTEEELIDHYLKKKIKGHDFND--VIPEIDICSYEPWDLP 93 79***********************99655..9**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-17 | 39 | 93 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.695 | 48 | 93 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-8 | 49 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
YLKKKIKGHD FNDLMSSLVT VSTVVTEQPQ EHSLFDESWP GMATSASLPV GFRFHPTEEE 60 LIDHYLKKKI KGHDFNDVIP EIDICSYEPW DLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307318.1 | 9e-30 | PREDICTED: NAC transcription factor 25-like | ||||
Swissprot | B5X570 | 3e-16 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | A0A2P6SIZ0 | 5e-22 | A0A2P6SIZ0_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004307318.1 | 4e-29 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11433 | 17 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 3e-18 | TCV-interacting protein |