PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00032673_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 140aa    MW: 15564.5 Da    PI: 7.191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00032673_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.5e-212879156
                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                      s+y+GVr+++ +g+W+AeIrdp+    r  r++lg+f taeeAa+a+++a+ ++ ge
  FANhyb_icon00032673_a.1.g00001.1 28 SKYRGVRQRP-WGKWAAEIRDPR----RaVRVWLGTFQTAEEAARAYDKAAVEFQGE 79
                                      89********.**********82....48**********************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-142877IPR001471AP2/ERF domain
CDDcd000182.96E-332886No hitNo description
SuperFamilySSF541711.31E-232888IPR016177DNA-binding domain
SMARTSM003809.5E-382992IPR001471AP2/ERF domain
PROSITE profilePS5103225.0532986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-332987IPR001471AP2/ERF domain
PRINTSPR003671.6E-123041IPR001471AP2/ERF domain
PRINTSPR003671.6E-125268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
VCKIDGCLGC EFFPPSNKHG KGKRVKKSKY RGVRQRPWGK WAAEIRDPRR AVRVWLGTFQ  60
TAEEAARAYD KAAVEFQGEK AKLNFPLSSA AGTSSAALTS QSIEADEVKD DEIDSFIWQM  120
LKDDDGPEDL STLVNSNLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-242094580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289221.19e-86PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9FH544e-30EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A3S8T9435e-84A0A3S8T943_FRAAN; Transcription factor ERF93
STRINGXP_004289221.13e-85(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-18ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]