PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00031661_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 110aa    MW: 11595.3 Da    PI: 10.9512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00031661_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-171059155
                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                      ++y+G+r ++  g+Wv+eIr+p++   +kr++lg+f t+e+Aa+a++ a+++l+ 
  FANhyb_icon00031661_a.1.g00001.1 10 PRYRGIR-CR-GGKWVSEIREPRK---TKRIWLGTFPTPEMAAAAYDVAALALKR 59
                                      68****9.55.7*********843...5***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-111059IPR001471AP2/ERF domain
CDDcd000181.30E-141067No hitNo description
SuperFamilySSF541711.05E-181168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-261167IPR001471AP2/ERF domain
SMARTSM003806.4E-261173IPR001471AP2/ERF domain
PROSITE profilePS5103219.9811167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MASSSSGKHP RYRGIRCRGG KWVSEIREPR KTKRIWLGTF PTPEMAAAAY DVAALALKRE  60
DAILNFPGSI KSYPVPASMS ALDIRAAATA AATAAAAAAT LKTSGSREST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-148671172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463809.12e-53PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9LYD32e-33DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q8TED36e-52A0A3Q8TED3_FRAAN; Transcription factor ERF17
STRINGXP_004298779.19e-53(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]