PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00027156_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 130aa    MW: 13942.8 Da    PI: 9.5765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00027156_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-181160255
                               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                      +y+GVr +k +g+Wv+eIr+p++   + r++lg++  +e+Aa+a++aa++ l+g
  FANhyb_icon00027156_a.1.g00001.1 11 KYRGVRKRK-WGKWVSEIREPRK---KSRIWLGSYEAPEMAAAAYDAAALHLKG 60
                                      8*****999.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-191069No hitNo description
PROSITE profilePS5103222.8531168IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-211169IPR016177DNA-binding domain
PfamPF008473.3E-121160IPR001471AP2/ERF domain
SMARTSM003805.1E-331174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-301169IPR001471AP2/ERF domain
PRINTSPR003677.3E-121223IPR001471AP2/ERF domain
PRINTSPR003677.3E-125070IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEEVHDEPAA KYRGVRKRKW GKWVSEIREP RKKSRIWLGS YEAPEMAAAA YDAAALHLKG  60
PGVVLNFPEM VDSLPRPASS SPTDVQLAAQ EAANAIRFRN QPMNSVSTEV AGGSSGGAAP  120
VTVGLSPSQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-171273668ATERF1
3gcc_A6e-171273668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301452.11e-88PREDICTED: ethylene-responsive transcription factor ERF022
SwissprotQ9C9I22e-38ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3S8T8Z53e-87A0A3S8T8Z5_FRAAN; Transcription factor ERF12
STRINGXP_004301452.14e-88(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-32ERF family protein