PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

FANhyb_icon00025939_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 168aa MW: 18384 Da PI: 7.1329

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00025939_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	67.4	2.9e-21	94	168	50	127
GRAS 50 aarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWp 126 a+rla+++++ly +l+++++s ++ ++++++ v+P+lk+s + aNq+Il+a e++e++HiiDf+i qG+QWp FANhyb_icon00025939_a.1.g00001.1 94 ATRLAGTGTQLYTTLATKRAS---AADFSKFYRALLAVCPFLKMSMIFANQMILKAYEKAETLHIIDFGIRQGFQWP 167 6899*******99999998...89999*********************************************9 PP GRAS 127 a 127 a FANhyb_icon00025939_a.1.g00001.1 168 A 168 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.051	1	168	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-18	94	168	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
LEDGRNNKQS VVYVDDEEGE LSDSFGKALL SGKAVESKED QVCQNGANNG LQQDVLVSQK 60 ACGMKPGNKK EVIDLRRLLI SCAEAVAVDD RGTATRLAGT GTQLYTTLAT KRASAADFSK 120 FYRALLAVCP FLKMSMIFAN QMILKAYEKA ETLHIIDFGI RQGFQWPA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	1e-98	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	1e-35	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P6QIX5	1e-69	A0A2P6QIX5_ROSCH; Putative transcription factor GRAS family
TrEMBL	A0A2P6QIZ9	1e-69	A0A2P6QIZ9_ROSCH; Putative transcription factor GRAS family
STRING	XP_004294644.1	5e-98	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	8e-30	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]