PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00022263_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 86aa MW: 10210.7 Da PI: 10.4677 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.7 | 8.8e-08 | 59 | 86 | 1 | 28 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSC CS HLH 1 rrrahnerErrRRdriNsafeeLrellP 28 ++ +h +Er+RR+++ + ++ Lr++lP FANhyb_icon00022263_a.1.g00001.1 59 KKIMHRDIERQRRQEMTTLYASLRSHLP 86 6789***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.83E-6 | 50 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.489 | 58 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-4 | 58 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-5 | 59 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MYTHSRSHSV LLLIKSSKDH VHLMIPRQID FSQPKRKASI TFGEIDDDQN PDQESKKVKK 60 IMHRDIERQR RQEMTTLYAS LRSHLP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300739.1 | 3e-41 | PREDICTED: transcription factor bHLH36 | ||||
TrEMBL | A0A2P6P7I2 | 2e-25 | A0A2P6P7I2_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004300739.1 | 1e-40 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 2e-11 | bHLH family protein |