PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00021453_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 57aa    MW: 6720.31 Da    PI: 4.137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00021453_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-11851146
                                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                      ++ ++++E+ l+ + +++ G + W++Ia +++ gR+++++  +w++
  FANhyb_icon00021453_a.1.g00001.1  8 KLDFSEDEEFLITRMFNLVGER-WSLIAGRIP-GRSAEEIEKYWNS 51
                                      5789******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.288157IPR017930Myb domain
SMARTSM007177.4E-8755IPR001005SANT/Myb domain
SuperFamilySSF466893.12E-91053IPR009057Homeodomain-like
PfamPF002491.3E-91051IPR001005SANT/Myb domain
CDDcd001676.06E-71150No hitNo description
Gene3DG3DSA:1.10.10.602.4E-121152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
EDTSQDSKLD FSEDEEFLIT RMFNLVGERW SLIAGRIPGR SAEEIEKYWN SRYSTSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024182922.18e-35MYB-like transcription factor ETC1
TrEMBLA0A2P6S2E72e-33A0A2P6S2E7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004287932.14e-34(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26923178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.12e-17MYB_related family protein