PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00020451_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8188.24 Da PI: 8.5098 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 15 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+ Ed+ l d+vkq G g W + +r+ g FANhyb_icon00020451_a.1.g00001.1 15 KGAWTAHEDQVLRDYVKQNGEGKWGKMSRETG 46 79**************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-10 | 7 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.679 | 10 | 43 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.72E-7 | 10 | 46 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.6E-6 | 15 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.26E-5 | 17 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MGRSSSRCDK EGANKGAWTA HEDQVLRDYV KQNGEGKWGK MSRETGENSL SVISTMNTAS 60 FSSMKMAEQL LIVM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303467.1 | 1e-25 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A2P6Q1G2 | 4e-23 | A0A2P6Q1G2_ROSCH; Putative transcription factor MYB-HB-like family | ||||
TrEMBL | D6PT02 | 7e-23 | D6PT02_ROSRU; Putative MYB transcription factor | ||||
TrEMBL | F2QKW3 | 4e-23 | F2QKW3_ROSRU; Putative MYB transcription factor | ||||
STRING | XP_004303467.1 | 4e-25 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22003 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-11 | myb domain protein 3 |