PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00018951_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 162aa MW: 18975.1 Da PI: 10.2237 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.1 | 4.5e-16 | 1 | 116 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.........................teker 52 Y+ Y+ +GFs+rk+k+ k + + +++r ++Cskeg+ ++ +++ ++ FANhyb_icon00018951_a.1.g00001.1 1 YSYYGFIMGFSIRKNKMDKLvvNGVEVVVRRSWNCSKEGYCKQLRNNkqppfeyeeggkikrnvfsdkckgkKKAVF 77 899****************9555556799**********9998888789******************9987555556 PP FAR1 53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 r+ + +r gC+a l vk++k +g ++v+k++++HnHela FANhyb_icon00018951_a.1.g00001.1 78 REIKYSRSGCRALLWVKLNKkSGLYHVSKFVTDHNHELA 116 688999*************99****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-13 | 1 | 116 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
YSYYGFIMGF SIRKNKMDKL VVNGVEVVVR RSWNCSKEGY CKQLRNNKQP PFEYEEGGKI 60 KRNVFSDKCK GKKKAVFREI KYSRSGCRAL LWVKLNKKSG LYHVSKFVTD HNHELAQVSE 120 RYLLRSNRHV LIQDIYEVQT LREAQVSTSA AIYIYCVPIG MF |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17612 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-08 | FAR1-related sequence 5 |