PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00016046_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 172aa MW: 19202.9 Da PI: 6.5358

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00016046_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	63	112	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 + y+GVr+++ g+Wv+eIr p k+ r++lg+f +e+Aa+a++ a+++l+ FANhyb_icon00016046_a.1.g00001.1 63 PVYRGVRQRS--GKWVCEIRQP---DlKKSRVWLGTFTCPEMAARAYDVAALSLR 112 68**9865..*****9...6667*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.8E-11	63	112	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.649	64	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.99E-15	64	113	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.2E-24	64	114	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-18	64	128	IPR001471	AP2/ERF domain
CDD	cd00018	1.03E-20	65	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MLSDASASSL MAYREEPAAA AAAAPSSPAS VLMNMGQTLT HIQSGVIKKR KAGRKKFTET 60 RHPVYRGVRQ RSGKWVCEIR QPDLKKSRVW LGTFTCPEMA ARAYDVAALS LREVESRSSR 120 IGYVDEEELF NMPELLDSLA EGLILTPPAM QKGFNWDDYD LENAVEFSLW SD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305358.1	1e-105	PREDICTED: dehydration-responsive element-binding protein 1B-like
Swissprot	Q9FJ93	8e-29	DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBL	A0A3S8T976	1e-102	A0A3S8T976_FRAAN; Transcription factor ERF18
STRING	XP_004305358.1	1e-104	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	4e-27	C-repeat-binding factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guttikonda SK, et al. Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean. Mol. Biol. Rep., 2014. 41(12): p. 7995-8008 [PMID:25192890] Zhang T, et al. Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 94: p. 153-64 [PMID:26093308] Carlow CE, et al. Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains. Plant Physiol. Biochem., 2017. 118: p. 306-319 [PMID:28675818] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]