PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00014569_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 123aa    MW: 13790.3 Da    PI: 7.4142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00014569_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-1168115455
                                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  FANhyb_icon00014569_a.1.g00001.1  68 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 115
                                       8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1662120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-962119No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1664119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.61864114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-868115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-970120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
AVGEDDSSDK RMKGCAEEGD SKITEQNSTK NNDRESSADT SKGNSKASEV QKPDYIHVRA  60
RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEV  120
IYI
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289668.15e-80PREDICTED: transcription factor bHLH63
SwissprotQ9ZPW34e-44HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A2P6PP854e-77A0A2P6PP85_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289668.12e-79(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.22e-46bHLH family protein