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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00013058_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 68aa MW: 7664.57 Da PI: 4.613 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.3e-09 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+W + Ed+ll+d++k +G g W+ +a++ FANhyb_icon00013058_a.1.g00001.1 14 KGAWLEAEDKLLLDYIKNHGEGKWSNVAKE 43 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-12 | 6 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.608 | 9 | 59 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.24E-7 | 9 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-7 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.88E-5 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MGRGPRCSKD GLNKGAWLEA EDKLLLDYIK NHGEGKWSNV AKETVISADR SKEMWEELPT 60 SLDELSET |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024164756.1 | 7e-23 | transcription factor MYB8-like | ||||
TrEMBL | A0A2P6PZP2 | 2e-21 | A0A2P6PZP2_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004291264.1 | 6e-22 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22003 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35515.1 | 3e-13 | high response to osmotic stress 10 |