PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00012528_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 73aa    MW: 8395.58 Da    PI: 4.8679
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00012528_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.94.1e-251573260
                                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                      HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                                      Fl k+y ++ed++++ +isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+Y
  FANhyb_icon00012528_a.1.g00001.1 15 FLLKTYMLVEDPATDAVISWNEDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTY 73
                                      9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-27773IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.29E-231073IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-171173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-161538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-211573IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-165365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-166673IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
VLLEYVTRKS SPPPFLLKTY MLVEDPATDA VISWNEDGSA FVVWQPAEFA RDLLPTLFKH  60
SNFSSFVRQL NTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-1710731578Heat shock factor protein 1
5d5u_B1e-1710732487Heat shock factor protein 1
5d5v_B1e-1710732487Heat shock factor protein 1
5d5v_D1e-1710732487Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304340.13e-47PREDICTED: heat stress transcription factor B-3
SwissprotO222306e-35HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1B0VB986e-46A0A1B0VB98_FRAVE; Heat shock factor B3a
STRINGXP_004304340.11e-46(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-37heat shock transcription factor B3