PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00010638_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 156aa MW: 18372.1 Da PI: 9.8598

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00010638_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.2	2.8e-48	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 pGfrFhPt+eel+ +yLk v gk+l++ ++i+ ++iy+++PwdLp k +e+ewyfF++rd+k+ +g r+nr+t+ FANhyb_icon00010638_a.1.g00001.1 12 PGFRFHPTEEELLEFYLKSVVFGKRLRF-DIIEFLNIYRHDPWDLPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTE 87 9***********************99.99***********8778899******************** PP NAM 80 sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wkatg+d++++s ++ +gl+ktLvfykgrap+g+ktdWvm+eyrl FANhyb_icon00010638_a.1.g00001.1 88 TGFWKATGSDRKIVSLsdPKRIIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 138 *********997666778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.888	10	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.23E-53	11	141	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MASEMTPELE LPGFRFHPTE EELLEFYLKS VVFGKRLRFD IIEFLNIYRH DPWDLPGLSK 60 IGEREWYFFV PRDRKHGSGG RPNRTTETGF WKATGSDRKI VSLSDPKRII GLRKTLVFYK 120 GRAPRGTKTD WVMNEYRLPD HCKLLKVDFD ASQFSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-47	1	138	3	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290041.1	1e-105	PREDICTED: NAC transcription factor 29
Swissprot	Q10S65	9e-80	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2P6S9T9	1e-104	A0A2P6S9T9_ROSCH; Putative transcription factor NAM family
STRING	XP_004290041.1	1e-105	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-85	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]