PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00009606_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 117aa MW: 12868.2 Da PI: 4.3826 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.8 | 3.6e-09 | 62 | 116 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLp 48 lp+G++F+Ptd+e++ ++L++kv +++ + +e+i+++d i++++P++Lp FANhyb_icon00009606_a.1.g00001.1 62 LPAGVKFDPTDQEIL-QHLEAKVLTDTrklhplI--DEFIPTLDgengICSTHPEKLP 116 799***********9.99****999995664322..234655555556*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-9 | 56 | 117 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.503 | 62 | 117 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MTWHSDDEEP EERAAVQSIT PSSATYPQQS KNNKNNEISS CPSCGHPIDF QDQAGIHDLP 60 GLPAGVKFDP TDQEILQHLE AKVLTDTRKL HPLIDEFIPT LDGENGICST HPEKLPG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293895.1 | 6e-79 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Swissprot | O49459 | 2e-41 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1L1Y287 | 2e-77 | A0A1L1Y287_9ROSA; NAC transcription factor 1 | ||||
STRING | XP_004293895.1 | 2e-78 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17526 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 7e-44 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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