PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00009395_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 297aa    MW: 33961.9 Da    PI: 5.0474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00009395_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.8e-33171702128
                               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvkae 54 
                                       p+G+r++P+deel++e L++k + k+ +++++i+e+d++k+eP++Lp+                        +  ++
  FANhyb_icon00009395_a.1.g00001.1  17 PKGYRYNPSDEELLSE-LEQKNHCKDSQITTIIPEIDVCKYEPRQLPElaftraenlagkffsffffwiireESWHS 92 
                                       89************77.9***99999999999***************6689****9999999999999876533347 PP

                               NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfyk...grapkgektdWvmheyr 127
                                       +++wyfF++ d ky+ ++r nr+t +g+Wk tgkd+++++  +++++g k+tL+fyk    +a+k +kt Wv+hey 
  FANhyb_icon00009395_a.1.g00001.1  93 QRKWYFFTRLDYKYTGSSRVNRTTGEGFWKITGKDRAIKAPdSKAVIGRKRTLTFYKrgvSKAQKDQKTGWVIHEYF 169
                                       78*************************************99666779*********5333599999**********7 PP

                               NAM 128 l 128
                                       l
  FANhyb_icon00009395_a.1.g00001.1 170 L 170
                                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3510192IPR003441NAC domain
PROSITE profilePS5100538.82516192IPR003441NAC domain
PfamPF023653.4E-1717169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
NQLSKVKEMS SGGFTAPKGY RYNPSDEELL SELEQKNHCK DSQITTIIPE IDVCKYEPRQ  60
LPELAFTRAE NLAGKFFSFF FFWIIREESW HSQRKWYFFT RLDYKYTGSS RVNRTTGEGF  120
WKITGKDRAI KAPDSKAVIG RKRTLTFYKR GVSKAQKDQK TGWVIHEYFL IQESCDPPKQ  180
IGEYVVCCLK YKSDNSDHDK DAPFCNRGSS SCSMASNVEN QAEENWVSEE LANVVPIPNG  240
NESETVGGMI TEEEEYLALK ELEDAVQVPI GNPHDFEGMQ TDPCCIEHND HSISVEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-221419615168NO APICAL MERISTEM PROTEIN
1ut4_B3e-221419615168NO APICAL MERISTEM PROTEIN
1ut7_A3e-221419615168NO APICAL MERISTEM PROTEIN
1ut7_B3e-221419615168NO APICAL MERISTEM PROTEIN
4dul_A3e-221419615168NAC domain-containing protein 19
4dul_B3e-221419615168NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306602.10.0PREDICTED: protein ATAF2-like
RefseqXP_011468878.10.0PREDICTED: protein ATAF2-like
TrEMBLA0A2P6S9W81e-152A0A2P6S9W8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306602.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3276322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.19e-29NAC 014