PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00008414_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 209aa    MW: 24281.4 Da    PI: 8.5923
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00008414_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.81.2e-071279368
                                      HHHHHHHHCTGGGTTTSEES.SSSSEEEES-.HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---S CS
                      HSF_DNA-bind  3 lkklyeiledeelkelisws.engnsfvvld.eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkde 68
                                      +++ly++l++e+++ ++sw+ +++n f  +  e++f + + +++   sn+ ++ R L  +gF++  +e
  FANhyb_icon00008414_a.1.g00001.1 12 IQQLYDVLHSEHMRPYVSWNnDDSNPFTFHRnEDDFRTAISSNFSAVSNYDALRRRLVCFGFESNGTE 79
                                      899*****************888899999863778999888888889***************976554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-6494IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-712100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MADKGKKPNT VIQQLYDVLH SEHMRPYVSW NNDDSNPFTF HRNEDDFRTA ISSNFSAVSN  60
YDALRRRLVC FGFESNGTEY WHTDSLFCKG KPELPLQIRK KKPVQAHPPR PHLYSQEDKI  120
DAMSLSKREA GYLDPSYLWT AKTQHREESS NCSSEAHAPF LTHPSGVCIP DWSRPPGNRY  180
ILLVILKEEM VQELIVYEKR KKAASLERR