PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00008203_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 18504.8 Da PI: 8.4971 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.8e-13 | 42 | 81 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++E++l+++ +k+ G++ W++Ia +++ gRt++++k++w + FANhyb_icon00008203_a.1.g00001.1 42 REDEEDLIIRMHKLVGKR-WSLIAGRIP-GRTDNEIKNYWIS 81 589***************.*********.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-10 | 18 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-18 | 18 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.173 | 33 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-12 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-11 | 43 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-9 | 43 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 45 | 83 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGKTSGLEEE RRKENGLGRC GRSVRLRWLN YLRPDIKHGN IREDEEDLII RMHKLVGKRW 60 SLIAGRIPGR TDNEIKNYWI STLSKKLAEE KRKKPEVPRN EIAKESLSSP IEVDDGHPHP 120 TKCNEVPGGG GGLMCFASNV NVEEDHQQQS RDTDNSTTMS AGMG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-16 | 18 | 87 | 39 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289470.1 | 1e-101 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 2e-34 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2P6Q722 | 3e-66 | A0A2P6Q722_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004289470.1 | 1e-100 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25744 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 9e-37 | myb domain protein 66 |