PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00006561_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 177aa MW: 18180.3 Da PI: 4.1437

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00006561_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	38.3	2.7e-12	1	34	27	59
E-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 27 Ctsa.gCpvkkkversaedpkvveitYegeHnhe 59 C+s+ gC+++k+vers+edp+++++tY g+H+h+ FANhyb_icon00006561_a.1.g00001.1 1 CSSSkGCSARKQVERSNEDPNMFVVTYCGDHTHP 34 77777****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03106	6.3E-10	1	34	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.0E-11	1	36	IPR003657	WRKY domain
SMART	SM00774	7.9E-7	1	35	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-10	1	36	IPR003657	WRKY domain
PROSITE profile	PS50811	16.352	1	36	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
CSSSKGCSAR KQVERSNEDP NMFVVTYCGD HTHPRPTHRN SLAGSTRNKA AFTTTSKLPE 60 SSPPVQLLPA AQGGGDDHDD EQGAANNNSG DGDKASEEAE DEEIEEDEED EEFVVSSEVD 120 IFLGMKQLGR TGSGGSTLGS LAAGASGDGF STKQSNLGSS WGAGCSSSAE ATVSGGC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004308041.1	1e-121	PREDICTED: probable WRKY transcription factor 27
Swissprot	Q9FLX8	2e-25	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A2P6SNG9	7e-70	A0A2P6SNG9_ROSCH; Putative transcription factor WRKY family
STRING	XP_004308041.1	1e-121	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6794	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	3e-26	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]