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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00005989_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 90aa MW: 9971.01 Da PI: 8.4639 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 7.1e-06 | 63 | 81 | 2 | 20 |
HHHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsaf 20 r +h+ E+rRR++iN+++ FANhyb_icon00005989_a.1.g00001.1 63 RSKHSVTEQRRRSKINERY 81 899**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.6E-6 | 60 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MRSAGKGSQD EDEYEDDDFG SKKDGPSSNS SNPNSKAIAI VLCIGFMIGE ADAKSNDKAS 60 AIRSKHSVTE QRRRSKINER YGLVVQYLKW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456859.1 | 2e-20 | PREDICTED: transcription factor BIM2 | ||||
Swissprot | Q9CAA4 | 4e-19 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A078H6T1 | 6e-19 | A0A078H6T1_BRANA; BnaC06g29910D protein | ||||
TrEMBL | A0A1J3CM67 | 6e-19 | A0A1J3CM67_NOCCA; Transcription factor BIM2 | ||||
TrEMBL | A0A1J3IPE8 | 7e-19 | A0A1J3IPE8_NOCCA; Transcription factor BIM2 | ||||
TrEMBL | A0A3P6BF88 | 6e-19 | A0A3P6BF88_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6FZM7 | 7e-19 | A0A3P6FZM7_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bra004355.1-P | 1e-19 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32622 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-17 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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