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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00004615_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 19831.7 Da PI: 4.3596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.4 | 4.9e-15 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g FANhyb_icon00004615_a.1.g00001.1 2 RSWGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAARAIKG 44 57**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.533 | 1 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-27 | 1 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-26 | 1 | 54 | No hit | No description |
SMART | SM00380 | 1.3E-27 | 1 | 58 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-9 | 2 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 2 | 53 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MRSWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAR AIKGASAYLN FPELAQTLPQ 60 PASASPKDIQ AAAAKAASAF EEVKKCGAEV EEEEEQATQP SKDEETTTTT ANTSTSTSNS 120 TACSSSSSSV DYDDKLFDLP DLFMDGTNGS DQFCFSSSSS SSWHLCAADT GFRLEEPFLW 180 EY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 2 | 53 | 21 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307005.1 | 5e-93 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
Swissprot | Q8LBQ7 | 6e-58 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A3Q8TBF3 | 8e-93 | A0A3Q8TBF3_FRAAN; Transcription factor ERF21 | ||||
STRING | XP_004307005.1 | 2e-92 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 4e-32 | ERF family protein |
Publications ? help Back to Top | |||
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