PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00004452_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 237aa    MW: 25581.2 Da    PI: 10.8011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00004452_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-204090256
                               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                      +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a++ a+++++g+
  FANhyb_icon00004452_a.1.g00001.1 40 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAAQAYDTAALRFRGN 90
                                      8********.**********66.....56*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-323998IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-234099IPR016177DNA-binding domain
PROSITE profilePS5103225.6464097IPR001471AP2/ERF domain
CDDcd000183.65E-244099No hitNo description
SMARTSM003801.2E-3540103IPR001471AP2/ERF domain
PfamPF008471.3E-134089IPR001471AP2/ERF domain
PRINTSPR003679.4E-124152IPR001471AP2/ERF domain
PRINTSPR003679.4E-126379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMNSTENSIT RNRSTNVTPG LQTAYEYSAP QISEQPTRRK YRGVRQRPWG KWAAEIRDPF  60
KAARVWLGTF DTAEAAAQAY DTAALRFRGN KAKLNFPENV RLRSLPSSAA ENNPMTSQPT  120
VSGSPNALLS IPTSTEAIVH SHAATSFQQQ RAPMNLYDQM VLLSSSSSPS ATTSSSTLAS  180
SVSSASSSPS PHVFSSRFIA QSTSPVQLRQ ATGDRSGGAD LSMQHQWSTS SGHHSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2239100163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464560.11e-125PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A3Q8TD971e-122A0A3Q8TD97_FRAAN; Transcription factor ERF92
STRINGXP_004288079.11e-123(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-29ethylene response factor 110