PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00004089_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 90aa MW: 10355 Da PI: 9.7525 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.5 | 4e-09 | 15 | 44 | 16 | 45 |
HHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgk 45 R + KKA+E S+LC+++v++i f ++++ FANhyb_icon00004089_a.1.g00001.1 15 RERKLCKKANERSILCGTDVCMITFKPHNT 44 777899******************987664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.507 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-10 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-8 | 15 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MVKVPSFRRK LLRDRERKLC KKANERSILC GTDVCMITFK PHNTKPETWP QEQAKAMVMQ 60 YQEGTAKHPQ NELIGDDEAK LASLEAKLQA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470562.1 | 4e-47 | PREDICTED: uncharacterized protein LOC105353257 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32548 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 1e-06 | M-type_MADS family protein |