PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00003061_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 173aa MW: 18187.3 Da PI: 9.373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00003061_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.8	3.4e-29	89	167	1	81
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s FANhyb_icon00003061_a.1.g00001.1 89 RWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS- 164 8*********************************************************************977776. PP trihelix 78 tcpy 81 +++ FANhyb_icon00003061_a.1.g00001.1 165 -YKF 167 .444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0062	86	148	IPR001005	SANT/Myb domain
Pfam	PF13837	9.1E-20	88	168	No hit	No description
PROSITE profile	PS50090	6.586	88	146	IPR017877	Myb-like domain
CDD	cd12203	3.90E-29	88	153	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MQGGGGGGTQ SHYGVVVSSA AEASTAAAPS MAAEAADQAH VVEEASPISS RPPAGGAISA 60 VNLDELMTLS GAAADVAADQ GGGGSGGNRW PRQETLALLK IRSEMDVAFR DATLKGPLWE 120 DVSRKLAELG YKRNAKKCKE KFENVHKYYK RTKEGRAGRQ DGKSYKFSVE MRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	KRNAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269\|PubMed:19717615, ECO:0000269\|PubMed:21169508}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by water stress. {ECO:0000269\|PubMed:21169508}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309494.1	2e-89	PREDICTED: trihelix transcription factor GTL1 isoform X1
Refseq	XP_011470851.1	2e-90	PREDICTED: trihelix transcription factor GTL1 isoform X2
Swissprot	Q9C882	1e-51	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	A0A2H4NFV4	5e-88	A0A2H4NFV4_FRAAN; Trihelix transcription factor GT-2F
STRING	XP_004309494.1	8e-89	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	5e-48	GT-2-like 1

Publications ? help Back to Top
Caro E,Desvoyes B,Gutierrez C GTL1 keeps cell growth and nuclear ploidy under control. EMBO J., 2012. 31(24): p. 4483-5 [PMID:23188085] Zheng X, et al. The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development. Sci Rep, 2016. 6: p. 27042 [PMID:27245096] Shibata M, et al. GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development, 2018. [PMID:29439132]