PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002021_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 517aa    MW: 58740.9 Da    PI: 4.7513
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002021_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.65.2e-15321565127
                               NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.k....kvkaeekewyfFskrdkkya..tgkr 73 
                                       + F+Ptd++l+ ++L + ++    ++  +i+++d++ + ePw +  k    + + + +e+yfF+++ kk +   g+r
  FANhyb_icon00002021_a.1.g00001.1  32 ITFNPTDSQLI-QFLLQDLAP---DF--IITDCDLFGHeEPWAIWdKylgfRNQFNPDELYFFMPALKKLSpnGGSR 102
                                       47*********.666555543...33..699***998868****6444544333355599*****99987753589* PP

                               NAM  74 knratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                                        nr++  g W ++   k v++   +g+++g+k+ L + ++r+ +  +++W+++ey+
  FANhyb_icon00002021_a.1.g00001.1 103 INRTIGGGSWTQKEPFKIVCADedEGRAIGVKRKLKYLNQRSDQ--NAQWCLDEYT 156
                                       ***********99887777776778888**********665555..9********7 PP
2NAM323.7e-101933282127
                               NAM   2 ppGfr..FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka..eek.ewyfFskrdkkya... 69 
                                       p G+r  F+Pt+++l+ +++  +++ +      ++ ++d++   ePw++ ++++a  ++   +yf++++ k+ +   
  FANhyb_icon00002021_a.1.g00001.1 193 PLGMRifFRPTESQLIRYFIGLNIAPDF-----IVYDCDLFGQeEPWEIWERYSAafNKPdLLYFYASSMKRLSskg 264
                                       66776669********888877666444.....477899886549****7543332233325599999888776322 PP

                               NAM  70 tgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyr 127
                                       +g +  r + sg+W+++   k v++         k + +g k+ L + +  +++ ++ +W ++e++
  FANhyb_icon00002021_a.1.g00001.1 265 RGCNFDRRVGSGTWNQKEAAKFVYEDvgeadqerKPKRIGKKRKLRYVN--ESSVHHGEWYLEEFT 328
                                       4557788899**************99777665444444*********95..555569*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-1620164IPR003441NAC domain
PROSITE profilePS5100517.1328173IPR003441NAC domain
PfamPF023652.5E-932156IPR003441NAC domain
SuperFamilySSF1019414.45E-10191333IPR003441NAC domain
PROSITE profilePS5100512.665194344IPR003441NAC domain
PfamPF023651.4E-6200328IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSISSVSYSG GFAASEPSIS TMASSLPLGT QITFNPTDSQ LIQFLLQDLA PDFIITDCDL  60
FGHEEPWAIW DKYLGFRNQF NPDELYFFMP ALKKLSPNGG SRINRTIGGG SWTQKEPFKI  120
VCADEDEGRA IGVKRKLKYL NQRSDQNAQW CLDEYTSTVE GHKSCAIFRL RRNERQHKSL  180
SGICVEDFNQ TLPLGMRIFF RPTESQLIRY FIGLNIAPDF IVYDCDLFGQ EEPWEIWERY  240
SAAFNKPDLL YFYASSMKRL SSKGRGCNFD RRVGSGTWNQ KEAAKFVYED VGEADQERKP  300
KRIGKKRKLR YVNESSVHHG EWYLEEFTSL VDDGAVLLLR RNERYKAPCL SISSDIPKEK  360
KRKRQQIDQL EDKKPKRKKV VRQLDFSDSL NSQGESGTTP TVHIQQQKPD NVDDVLEFFK  420
DVDTGSWEFP SFDDFVMACP PALEDCDLEA LASLEFPSLD EFFAACHPLE DCDQEASTSL  480
ELPSLVDLTS PSPSAGDQQA IAAVDTDDNF NLTGSCN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299307PKRIGKKRK
2360375KRKRQQIDQLEDKKPK
3361378RKRQQIDQLEDKKPKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6SG640.0A0A2P6SG64_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3246722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.25e-11NAC family protein