PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

FANhyb_icon00001740_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 578aa MW: 64528.9 Da PI: 6.8258

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00001740_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	307.7	2.6e-94	282	578	1	299
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 l+ lL+ cA+avs +dle a++lL+++ +++sp+gd +qRla++f++AL+arla++++++y al++++ s ++ FANhyb_icon00001740_a.1.g00001.1 282 LRALLILCAQAVSVDDLETASELLQQITQHSSPSGDCTQRLAHCFANALEARLAGTGTQIYTALSSKRRS---AADM 355 5789**********************************************************999998...99 PP GRAS 78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg. 153 l +++++ ++P++k+s + aN++Il+a+e+++++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p sg FANhyb_icon00001740_a.1.g00001.1 356 LRFYQTYIAACPFMKMSMIFANHMILKAAEKADTLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPLSGf 432 ***********************************************************************9999 PP GRAS 154 .skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229 +e+++etg+rLak++++++vpfe+ + +ak+++++++++L+v+++E++aVn+v + ++llde+v ++s+rd+vL+ FANhyb_icon00001740_a.1.g00001.1 433 rPEERVQETGHRLAKYCKRFNVPFEYYA-IAKKWDTVQFDDLKVQRNEVVAVNCVWRFKYLLDETVVVTSPRDTVLN 508 ************************.7******************************************* PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 l+++l+P+v+v + + ++ ++ F+ rf ea+ ++salfd+++++lpr+++ r E+e++gre+vn+va FANhyb_icon00001740_a.1.g00001.1 509 LIRKLNPDVFVQTVVNGSYHAPFFVSRFREAIFHFSALFDMFDSNLPRDDQMRLGFEKEFIGREVVNIVA 578 ******************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.159	256	578	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-92	282	578	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
EEDMGSKPCM FHDPLVLQAT EESLYEVIGG GKYPTSQDQN PLCVDRIVQS PDGGYSSVSF 60 SDSTHSSSSP GPSGDSCMVN AQFVETRSSI LQNPIPENFV FKSPSRANSQ SSTNRYGEGN 120 GNWMVGSYRR EFMVPDVVSK NELLLQFNRG AEEGSKFLPR VQLISAEGNK TYVVANSKAG 180 NVVVTTQNGS EHVCVGSRGK KHHQREDTDL EDGRSNKQSA VYMDDEEGEL SDIFDKVLLC 240 KPLESRDNQV SQNGADNRQS VGIGNGMVRG KSQGNKKKVV DLRALLILCA QAVSVDDLET 300 ASELLQQITQ HSSPSGDCTQ RLAHCFANAL EARLAGTGTQ IYTALSSKRR SAADMLRFYQ 360 TYIAACPFMK MSMIFANHMI LKAAEKADTL HIIDFGILYG FQWPALIHCL SRRPGGPPKL 420 RITGVELPLS GFRPEERVQE TGHRLAKYCK RFNVPFEYYA IAKKWDTVQF DDLKVQRNEV 480 VAVNCVWRFK YLLDETVVVT SPRDTVLNLI RKLNPDVFVQ TVVNGSYHAP FFVSRFREAI 540 FHFSALFDMF DSNLPRDDQM RLGFEKEFIG REVVNIVA

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

EEDMGSKPCM FHDPLVLQAT EESLYEVIGG GKYPTSQDQN PLCVDRIVQS PDGGYSSVSF  60
SDSTHSSSSP GPSGDSCMVN AQFVETRSSI LQNPIPENFV FKSPSRANSQ SSTNRYGEGN  120
GNWMVGSYRR EFMVPDVVSK NELLLQFNRG AEEGSKFLPR VQLISAEGNK TYVVANSKAG  180
NVVVTTQNGS EHVCVGSRGK KHHQREDTDL EDGRSNKQSA VYMDDEEGEL SDIFDKVLLC  240
KPLESRDNQV SQNGADNRQS VGIGNGMVRG KSQGNKKKVV DLRALLILCA QAVSVDDLET  300
ASELLQQITQ HSSPSGDCTQ RLAHCFANAL EARLAGTGTQ IYTALSSKRR SAADMLRFYQ  360
TYIAACPFMK MSMIFANHMI LKAAEKADTL HIIDFGILYG FQWPALIHCL SRRPGGPPKL  420
RITGVELPLS GFRPEERVQE TGHRLAKYCK RFNVPFEYYA IAKKWDTVQF DDLKVQRNEV  480
VAVNCVWRFK YLLDETVVVT SPRDTVLNLI RKLNPDVFVQ TVVNGSYHAP FFVSRFREAI  540
FHFSALFDMF DSNLPRDDQM RLGFEKEFIG REVVNIVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-53	289	578	25	304	Protein SCARECROW
5b3h_D	1e-53	289	578	25	304	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024156004.1	0.0	uncharacterized protein LOC112163987
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P6QIY0	0.0	A0A2P6QIY0_ROSCH; Putative transcription factor GRAS family
STRING	XP_008366267.1	0.0	(Malus domestica)
STRING	XP_008384951.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]