PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00001436_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 87aa MW: 9822.13 Da PI: 10.2643 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71 | 3.1e-22 | 2 | 67 | 65 | 128 |
NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 +ky+++ r+nr+t sg+Wkatg dk+++s+++ l +glkk+Lv+y+g+a kg+ktdW+m+e+rl FANhyb_icon00001436_a.1.g00001.1 2 GRKYRNSVRPNRVTGSGFWKATGIDKPIYSAEEPLecIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 67 589***************************7443356***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.574 | 1 | 87 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-23 | 1 | 75 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-9 | 11 | 67 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
RGRKYRNSVR PNRVTGSGFW KATGIDKPIY SAEEPLECIG LKKSLVYYRG SAGKGTKTDW 60 MMNEFRLPPN GKSATYFLNA KDNTEEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-19 | 1 | 67 | 79 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-19 | 1 | 67 | 79 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-19 | 1 | 67 | 79 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-19 | 1 | 67 | 79 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
3swm_B | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
3swm_C | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
3swm_D | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
3swp_A | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
3swp_B | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
3swp_C | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
3swp_D | 7e-19 | 1 | 67 | 82 | 145 | NAC domain-containing protein 19 |
4dul_A | 6e-19 | 1 | 67 | 79 | 142 | NAC domain-containing protein 19 |
4dul_B | 6e-19 | 1 | 67 | 79 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303892.1 | 2e-55 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 8e-36 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2P6S0G7 | 5e-53 | A0A2P6S0G7_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004303892.1 | 7e-55 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-38 | NAC domain containing protein 42 |