PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00000995_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 191aa MW: 21674.4 Da PI: 7.9607 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.8 | 2.3e-20 | 45 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgk 75 +fY++Y+ vGF rk+ + +s ng i +r++vC keg+r+++ + + +r++r++tr++C+a+++++ ++ + + FANhyb_icon00000995_a.1.g00001.1 45 RFYSAYSAAVGFGCRKDDKGES--NGLIRWRQWVCCKEGTRDKKYLEaDGLSRTPRKQTRVNCQARFRINYNDgSRV 119 5****************99998..9*****************998875677899*******************99** PP FAR1 76 wevtkleleHnHela 90 ++v+ ++ eHnHela FANhyb_icon00000995_a.1.g00001.1 120 YMVKIFVPEHNHELA 134 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-18 | 45 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MDASENEKQP NKGVEDVAVD VPGFGSLTIA DVRALTFETV DEAERFYSAY SAAVGFGCRK 60 DDKGESNGLI RWRQWVCCKE GTRDKKYLEA DGLSRTPRKQ TRVNCQARFR INYNDGSRVY 120 MVKIFVPEHN HELATGNQIA FVRAHRHVSD AALALTNTMT RVSIRPYHTY EYMVEQAGGY 180 LVVGFTMKDL Y |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308570.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004297887.1 | 1e-128 | (Fragaria vesca) | ||||
STRING | XP_004308570.1 | 1e-122 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-21 | FAR1-related sequence 5 |