PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000865_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 418aa    MW: 47203.6 Da    PI: 5.1473
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000865_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-1827105185
                                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                       f+k+++ps+v++  +l +p++f+ +h+   + +++++lede+g++++ k+ ++k +    l++GW+ F  a++L eg
  FANhyb_icon00000865_a.1.g00001.1  27 FVKIMMPSHVTRVFWLGIPRSFCHDHMP--KDDTMIVLEDEKGEEYQTKYLVEKEG----LSGGWRAFSVAHKLLEG 97 
                                       89*********************99963..46789***************666666....9**************** PP

                                       -EEEEEE- CS
                                B3  78 DfvvFkld 85 
                                       D+vvF+ +
  FANhyb_icon00000865_a.1.g00001.1  98 DVVVFHKV 105
                                       *****943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-1921110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-2222115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-2525111No hitNo description
PfamPF023624.9E-1627105IPR003340B3 DNA binding domain
PROSITE profilePS5086311.01127121IPR003340B3 DNA binding domain
SMARTSM010196.5E-1827121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
DTSEAQCSVL ERANELAANL APEFPSFVKI MMPSHVTRVF WLGIPRSFCH DHMPKDDTMI  60
VLEDEKGEEY QTKYLVEKEG LSGGWRAFSV AHKLLEGDVV VFHKVMPSKF KECHYDCCGK  120
DDGDYDDDDL TSSLQKRIVY IVRSNGSDKV DCTLGFNKFD DGIRQIKNTE VTAYESSGNG  180
KLQPISVETM HGNVKENTIA CNTKYGQISD HNQIDREVLH LEVPDAIRVS ESVIPFEEVS  240
CFENFKVTVG GSILNAEIFK HHLIKYYELC RSQNSFLHEN QNSFLHEHIL EPLNSNLVAG  300
VISETVNLSD VIRACKITTS ECDFLTWDKT LQASEILGMN VGFLRARLDK LASLASKSKL  360
NREAILARDQ AVKDLITLEA KFLRAKEVIN RLNLEIETLN TSSENLEAMF KEVAKAPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024165853.10.0B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_024165855.10.0B3 domain-containing protein Os01g0234100-like isoform X3
RefseqXP_024165856.10.0B3 domain-containing protein Os01g0234100-like isoform X4
TrEMBLA0A2P6PM860.0A0A2P6PM86_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004294825.11e-147(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-30B3 family protein