PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000037_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YC

Protein Properties

Length: 339aa MW: 37190.4 Da PI: 4.7896

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000037_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.4	7.7e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ +fdfl div FANhyb_icon00000037_a.1.g00001.1 6 DTRFPAARIKKIMQTDEDVGKIALAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCVKTFSVFDFLKDIV 84 5789**************************************************************************9 PP NF-YC 97 pr 98 + FANhyb_icon00000037_a.1.g00001.1 85 SK 86 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.8E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	4.92E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	9.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEITLKRGAK 60 TMNSLHLKQC VKTFSVFDFL KDIVSKVPDL GGSDAVGDEC SVAKRRKVSV DDEDTESDDE 120 TKRSKMMIDG GNTVGSGRGR GRGRGRGRKL VADDEDTDTD EESKASMMVH DAGNTPGSGR 180 GRGRGRGRPR GRPRGSRTVG REISAPNEKY EDDLDISKHE DKLDEPLELR DDAIERSKEN 240 ISGANSAEIA ARNFDLNVDL NENEDSATTS AAVHGPVPAP ATATAPVPAN LSSQFTPDMK 300 HVEFLGWPLT GMETMAIDPV QLANLTRKID EDEEDYDED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-21	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	183	193	RGRGRPRGRPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307150.1	1e-174	PREDICTED: myoneurin-like
TrEMBL	A0A2P6SCT3	1e-146	A0A2P6SCT3_ROSCH; Putative transcription factor Hap3/NF-YB family
STRING	XP_004307150.1	1e-173	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-54	nuclear factor Y, subunit C11