PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Eucgr.L03599.1.p

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 166aa MW: 18863.1 Da PI: 9.0908

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L03599.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4e-08	27	48	24	46
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W+ Ia++++ gRt+++++++w++ Eucgr.L03599.1.p 27 WSVIASKLP-GRTDNDVQNHWNT 48 *******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-6	19	55	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-10	23	57	IPR009057	Homeodomain-like
Pfam	PF00249	8.5E-6	27	48	IPR001005	SANT/Myb domain
CDD	cd00167	4.89E-6	27	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MEVSLRMGMT SYALFFNHRK QASVKMWSVI ASKLPGRTDN DVQNHWNTKP KKSLLKQMAS 60 LKTLPESNFS HQDWARNLAS IDPATKNQQY ADISIEVSSH SHSSSVAMKS CYSGSANGSS 120 EQDQVLLDFD YDSMLNDFGF QDQSIYAQFM FHKCHRHRSS HQHKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L03599.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010049592.1	1e-45	PREDICTED: transcription factor MYB36
TrEMBL	A0A059CV82	3e-44	A0A059CV82_EUCGR; Uncharacterized protein
STRING	XP_010049592.1	4e-45	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	3e-10	myb domain protein 87

Link Out ? help Back to Top
Phytozome	Eucgr.L03599.1.p