PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02202.1.p
Common NameEUGRSUZ_L02202, LOC104430417
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 271aa    MW: 30818.3 Da    PI: 4.8409
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02202.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.54.1e-2691332128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                       p+G+rF+Pt++elv ++L+kk++g+  ++  vi+e++iy++eP +L +      ++ ++ +e++fF++r +k        r+t  g+Wk+t +
  Eucgr.L02202.1.p   9 PVGLRFKPTEDELVGHHLTKKLRGEMETI-CVIPELHIYNWEPPELFArynelsSIPSDGRECFFFCPRGRK--------RKTPCGFWKETST 92 
                       89**********************99777.78**************643555555555889*******9885........77999******** PP

               NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ +++  + e++gl+++Lv++kgr++++++t+  mh y+l
  Eucgr.L02202.1.p  93 KRVIKAPdSAEEMGLRRSLVYHKGRQRDAHRTNLGMHIYNL 133
                       999999867778*************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-305155IPR003441NAC domain
PROSITE profilePS5100530.8678156IPR003441NAC domain
PfamPF023652.2E-179133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAESMEAWPV GLRFKPTEDE LVGHHLTKKL RGEMETICVI PELHIYNWEP PELFARYNEL  60
SSIPSDGREC FFFCPRGRKR KTPCGFWKET STKRVIKAPD SAEEMGLRRS LVYHKGRQRD  120
AHRTNLGMHI YNLNSNVSDS EILDPTALVL CHIINRKKEK AKPETPSTST ELSGPSNLND  180
SQIEETQDMS EQTSPGVTVE LPPNEMSNFN LLDRNLPTPD QQPHTTEEQH LSHDNREHDD  240
DPGDGHGFMP YSPSDCIDLV DLFNFDESTD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-16916216174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02202.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041451.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A058ZRB20.0A0A058ZRB2_EUCGR; Uncharacterized protein
STRINGXP_010041451.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-30NAC 014