PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01925.1.p
Common NameEUGRSUZ_L01925
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 294aa    MW: 32878 Da    PI: 4.7985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01925.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.11.3e-3451382128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                       p+G+rF+Pt++elv+++L+ k++gk   +   i+e+ iy++eP dL        ++ ++ +e++fF++   k ++++r+n  +t+ g+Wk t 
  Eucgr.L01925.1.p   5 PVGLRFEPTEDELVDHHLRGKLKGKLEAF-CLIPELYIYSCEPPDLFIsynelsAIPSDGRECFFFCPCGDKIPNNRRSNNrMTELGFWKDTC 96 
                       89*********************998555.78**************633555655666899*************98776544*********** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++ + s  +g+++g++k+Lv+y+gr+pkg+ktd vmhey+l
  Eucgr.L01925.1.p  97 KKRVIRSLvTGKQIGIRKILVYYEGRQPKGRKTDVVMHEYHL 138
                       *99998878999*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-353159IPR003441NAC domain
PROSITE profilePS5100535.084161IPR003441NAC domain
PfamPF023654.6E-195138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAAWPVGLRF EPTEDELVDH HLRGKLKGKL EAFCLIPELY IYSCEPPDLF ISYNELSAIP  60
SDGRECFFFC PCGDKIPNNR RSNNRMTELG FWKDTCKKRV IRSLVTGKQI GIRKILVYYE  120
GRQPKGRKTD VVMHEYHLNS SVSDSKISGQ MAFVLCHIID RKCKKARSAK VCASASSSTS  180
STPNDSGNGR SDEVSTEASG EVTIETQNQN EILISSMPDS NGPIIPQQDQ MHEEQSPLYD  240
GCPFIDGHSD ELYDLPYSPS NGMEILDLWN VPTDELVCQS FLPGEEYDGL TFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-22516216169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01925.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041186.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A058ZRY50.0A0A058ZRY5_EUCGR; Uncharacterized protein
STRINGXP_010041186.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-35NAC transcription factor-like 9