![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.L00494.1.p | ||||||||
Common Name | EUGRSUZ_L00494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 91aa MW: 10392.5 Da PI: 8.2407 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 40 | 91 | 2 | 53 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 rk+ ++++eq +Lee F+++++++ +++ LAk+l+L+ +qV vWFqNrRa Eucgr.L00494.1.p 40 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPKQVEVWFQNRRA 91 788899*********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 76.8 | 3.6e-25 | 40 | 91 | 1 | 52 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 +kk+rls+eq+ +LEe+F+e+++L+p++K +la++L+l+p+qv+vWFqnrRA Eucgr.L00494.1.p 40 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPKQVEVWFQNRRA 91 69*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 23 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-18 | 25 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 36 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-9 | 38 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.8E-16 | 40 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.09E-14 | 40 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 91 aa Download sequence Send to blast |
SISGKRSERD PHGENEVEAE RTSCSCESIE EDGSRGDGAR KKLRLSREQS LVLEETFKEH 60 NTLNPKQKLA LAKQLNLSPK QVEVWFQNRR A |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.L00494.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056406.1 | 7e-56 | PREDICTED: homeobox-leucine zipper protein ATHB-4 | ||||
Swissprot | P46602 | 2e-28 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A058ZWH5 | 3e-59 | A0A058ZWH5_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010056406.1 | 3e-55 | (Eucalyptus grandis) | ||||
STRING | XP_010066089.1 | 3e-57 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60390.1 | 3e-18 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.L00494.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|