PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.L00411.1.p | ||||||||
Common Name | EUGRSUZ_L00411, LOC104428444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 301aa MW: 34466.9 Da PI: 10.1344 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 74 | 95 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C++ F ++ n+krHir+H Eucgr.L00411.1.p 74 RCDKCHREFFSSVNYKRHIRVH 95 7********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.055 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 75 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 75 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MSVAKVKTSN ALDGMKVEDR NDSLNTFIRQ AIGKEPLLSL PRSGDNSFQW IHPLLQALDH 60 QDLPGWPLKI PMQRCDKCHR EFFSSVNYKR HIRVHHRLRK LDKDSSKNRD LLGPFWDKLS 120 AEEAKEIVSL KNSTMEDVPG TTVIKSLASL IRKPGFPVMP QFCLKAGSSL LDIVQARPPR 180 FPLSSQDLFG ILDDASEKTF LSGPTLLMRR FIFDKEVGKI GLDPKNLVAF TCFMLEQKLV 240 EAWLADKDAE ALRFQKLLVE EEEAAQRRQA EILERKRQKR LRQKEQKAKE HKNGEVKLEK 300 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 280 | ERKRQKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.L00411.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010039737.1 | 0.0 | PREDICTED: uncharacterized protein LOC104428444 | ||||
TrEMBL | A0A058ZXJ0 | 0.0 | A0A058ZXJ0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010039737.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5680 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 2e-94 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.L00411.1.p |
Entrez Gene | 104428444 |