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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.L00152.2.p | ||||||||
Common Name | EUGRSUZ_L00152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Trihelix | ||||||||
Protein Properties | Length: 287aa MW: 33172.6 Da PI: 6.5203 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.4 | 2.9e-26 | 175 | 258 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev+aLi++r ++ +l++g k p Wee+s m++ g++rs k+C+ekw+n+nk++kk e k++ s +s++cpyf++l+ Eucgr.L00152.2.p 175 RWPASEVQALIALRAALQPKLQSG-FKRPIWEEISCSMSAMGYQRSTKKCREKWDNINKYFKKSIEKGKNH-SANSKSCPYFHDLD 258 8*********************99.********************************************98.77888*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.015 | 168 | 231 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-4 | 170 | 241 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.3E-18 | 174 | 259 | No hit | No description |
CDD | cd12203 | 1.89E-18 | 174 | 237 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MPCDTLATSL AFCKCEMWMT ELTKSSSSEE GDDDASAIVR EPDNRKRKRS TRKDLELFMK 60 NMVMKLIARQ EQMHWELVQM LEKMERERIS REEAWHRQEM EQIKRNEELR AQETSRSLAL 120 ISYIEKLMGH QVPQQSKSLS IGEDEDENQG PKDVEFDPPN SAEKCDPNLK QNNERWPASE 180 VQALIALRAA LQPKLQSGFK RPIWEEISCS MSAMGYQRST KKCREKWDNI NKYFKKSIEK 240 GKNHSANSKS CPYFHDLDVL YKAGLIDSTK ALDSTSHKEE CEPSTV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.L00152.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010039436.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2 | ||||
TrEMBL | A0A058ZX42 | 0.0 | A0A058ZX42_EUCGR; Uncharacterized protein | ||||
STRING | XP_010039436.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 8e-47 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.L00152.2.p |