PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L00152.1.p
Common NameEUGRSUZ_L00152, LOC104428142
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 369aa    MW: 41080.9 Da    PI: 5.5675
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L00152.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.84.6e-26257340186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+ +ev+aLi++r  ++ +l++g  k p Wee+s  m++ g++rs k+C+ekw+n+nk++kk  e  k++ s +s++cpyf++l+
  Eucgr.L00152.1.p 257 RWPASEVQALIALRAALQPKLQSG-FKRPIWEEISCSMSAMGYQRSTKKCREKWDNINKYFKKSIEKGKNH-SANSKSCPYFHDLD 340
                       8*********************99.********************************************98.77888*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.015250313IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.3E-4252323IPR009057Homeodomain-like
PfamPF138373.7E-18256341No hitNo description
CDDcd122031.76E-19256319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MELLAGAAFA ESVDPFPEPS AASVCHQGSS PAAEVHCRRP KLKPIRCAAR SPPGTPEGGG  60
GPRARAGDDG SEGPSGGAGV ADAAEEKPGE GGGEPDSPAR FWEEPWCSSS EEGDDDASAI  120
VREPDNRKRK RSTRKDLELF MKNMVMKLIA RQEQMHWELV QMLEKMERER ISREEAWHRQ  180
EMEQIKRNEE LRAQETSRSL ALISYIEKLM GHQVPQQSKS LSIGEDEDEN QGPKDVEFDP  240
PNSAEKCDPN LKQNNERWPA SEVQALIALR AALQPKLQSG FKRPIWEEIS CSMSAMGYQR  300
STKKCREKWD NINKYFKKSI EKGKNHSANS KSCPYFHDLD VLYKAGLIDS TKALDSTSHK  360
EECEPSTV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L00152.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039436.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A058ZW260.0A0A058ZW26_EUCGR; Uncharacterized protein
STRINGXP_010039436.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.15e-46Trihelix family protein