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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K03560.2.p | ||||||||
Common Name | EUGRSUZ_K03560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 447aa MW: 49925.8 Da PI: 9.9061 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 1e-07 | 129 | 171 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE ++l d+++++ + + Ia +++ Rt +++k+r+++ Eucgr.K03560.2.p 129 AWTKEETDQLFDLCERFDLR-FIVIADRFPSSRTVEELKDRYYS 171 7*******************.*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 3.1E-31 | 102 | 176 | IPR032563 | DAMP1, SANT/Myb-like domain |
SMART | SM00717 | 6.1E-8 | 126 | 175 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.12E-6 | 126 | 172 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-6 | 129 | 173 | IPR009057 | Homeodomain-like |
CDD | cd11658 | 3.31E-19 | 130 | 172 | No hit | No description |
Pfam | PF05499 | 7.5E-7 | 315 | 375 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MDAKDILGLP KNQLPIPQEK KSRPPKEPQR KPDGISREVY ALTGGLAPLM PSVDVSQLKR 60 RPPSDEKVTW QWLPFTNSAR KDDLQLFHWV RVVNGVPPTG DYAFAKYNKS ANIIKYTDEE 120 YEKYLTDPAW TKEETDQLFD LCERFDLRFI VIADRFPSSR TVEELKDRYY SVSRALLSAR 180 APPADITGHP LVKPYNISQE VERKRALSMV LSQTKQQERK DTEVLAEAKR ITESRMAAKG 240 PEESELPAVA NIGPDNSQRA ITGDAVTPST AMPSSAIAAS STLMADNAST LASLRMLRVY 300 LRTYALDQMV QAASASAGLR TIKRVEQTLQ ELGVNLKPKV PTKAVCAEHL ELRKEILTLL 360 NLQKQLQYKE AEGTSFQDSP YSETPGTPKR APRGDQDRPF MPDPLGFGGD RFGKRDQKRK 420 APGRTSEAAQ SPSQSKRPRK MKASDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 3e-23 | 101 | 184 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 3e-23 | 101 | 184 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K03560.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010038302.1 | 0.0 | PREDICTED: SWR1-complex protein 4 isoform X1 | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | A0A059A8G1 | 0.0 | A0A059A8G1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010038302.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 0.0 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K03560.2.p |
Publications ? help Back to Top | |||
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