PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03325.1.p
Common NameEUGRSUZ_K03325, LOC104426633
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 354aa    MW: 39836.9 Da    PI: 5.1202
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03325.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.4e-36421332102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+i++d+ +++++sw++ g sfvv+d+++fa+++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll
  Eucgr.K03325.1.p  42 FLTKTYDIVDDPGTDHVVSWNAGGGSFVVWDPHSFATHLLPRYFKHNNFSSFVRQLNTYGFRKTDPDR---------WEFANEGFLRGQKHLL 125
                       9***************************************************************9999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+k 
  Eucgr.K03325.1.p 126 KSIKRRKA 133
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.9E-3938131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.17E-3638131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-6238131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-3242131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNPLYPVKEE FPGASSSSAA EAPAMNPPEP MEGLHDVGPP PFLTKTYDIV DDPGTDHVVS  60
WNAGGGSFVV WDPHSFATHL LPRYFKHNNF SSFVRQLNTY GFRKTDPDRW EFANEGFLRG  120
QKHLLKSIKR RKAPSGLIPQ QQAVGPCVEV GYFGPDGEVD RLKRDKQVLM LELVKLRQQQ  180
QNTRAYLQAM EQRLQKTEVK QKQMMAFLAR AMQNPAFLQQ LLQQKEKRKE LEEAVTKKRR  240
RPIDQGPSSS QAVEPRQGLE GTSSVKAEPL EFRDFGVEVS ELEALALEMQ GLGRARQEVE  300
EGLDDIEPPP DGVDKDLDEG FWEELFSEGG EDEDVDLLSN RLGYLGSSPK KRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254013118120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKSIKRR
2226240KRKELEEAVTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03325.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721425.10.0PREDICTED: heat stress transcription factor A-2b
SwissprotQ9LUH81e-129HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A059A8640.0A0A059A864_EUCGR; Uncharacterized protein
STRINGXP_010038059.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B