PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02965.1.p
Common NameEUGRSUZ_K02965
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 509aa    MW: 57223.3 Da    PI: 4.9728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02965.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.41.7e-221443124189
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lL +  ea+++++  l + +   + e a+p g+ m Rla+y+      r ++      + ++ ++      ++   a  + +++ P  +f+h+
  Eucgr.K02965.1.p 144 LLKAYGEAMENEQSDLLDVISGCIDESANPLGNVMDRLAFYMFD----RKQG-----LNYIKQEA-----FKNFKPASYAIYQILPHGRFAHF 222
                       55566666666666677777777777788888888888888754....2222.....11122222.....333444555689*********** PP

              GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +aN+ Ile++ ++ ++vH+iDfd+++ +QW aL++++a   +    lRiT ++  +++   e ee ++rL++ A+++gv++  +    +r+++
  Eucgr.K02965.1.p 223 AANSVILESLPKHiKAVHVIDFDMGEAFQWWALIESMAMV-RRRVALRITSMKWDDEKGLIEFEEAKRRLQEQAKAVGVELVVEE---SRIDA 311
                       ************99************************74.34579********9999*********************986554...44554 PP

              GRAS 189 l 189
                       l
  Eucgr.K02965.1.p 312 L 312
                       4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.393115508IPR005202Transcription factor GRAS
PfamPF035145.8E-20144312IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MMPSEFHRVP SWPIFEVMND PVGHVMGPCP NPEFCVGEHE FCSPFTETEG SSLYLSPSYL  60
PSGYSPNLVE IHNSKNSELD PIETFLMEID GFEQISSCND KGRTPSPTPS LYSEISNDVS  120
SVQASLVLPF EGMEVDNKLS LPHLLKAYGE AMENEQSDLL DVISGCIDES ANPLGNVMDR  180
LAFYMFDRKQ GLNYIKQEAF KNFKPASYAI YQILPHGRFA HFAANSVILE SLPKHIKAVH  240
VIDFDMGEAF QWWALIESMA MVRRRVALRI TSMKWDDEKG LIEFEEAKRR LQEQAKAVGV  300
ELVVEESRID ALASEMKRLS QRGGNNNDMR SQWMVFNVTK GLPHTGRRRS ERLVGEFLRL  360
AKEVIAHPAI GGIITSGRGE TSCESRNCSG FGEFFEQNIT FPKSAACRGK LAVESLFVSP  420
FVSCLDWFQT WEEMRARLDV PLGSCYVDGW RISQASLMEA MRLISGKESY SVAIGENENE  480
MVLEWKDSHM PLVKFSAWGI PSMFKAIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345352GRRRSERL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02965.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039165.10.0PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A059A7220.0A0A059A722_EUCGR; Uncharacterized protein
STRINGXP_010039165.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-10RGA-like 1