PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02897.1.p
Common NameEUGRSUZ_K02897
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 374aa    MW: 40319.6 Da    PI: 10.6215
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02897.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14160204347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ + ++ G+g+W++I+r + k+Rt+ q+ s+ qky
  Eucgr.K02897.1.p 160 PWTEEEHRLFLLGLQKVGKGDWRAISRNFVKTRTPTQVASHAQKY 204
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.609153209IPR017930Myb domain
SuperFamilySSF466895.23E-17155210IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-17156207IPR006447Myb domain, plants
SMARTSM007172.8E-11157207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-12159204IPR009057Homeodomain-like
PfamPF002491.2E-11160204IPR001005SANT/Myb domain
CDDcd001677.32E-10160205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPFSFHLTGL VSSRPVRSPP SLPPSFLLSL SLSLSRRPTV RTLGFAAKRN GADPVPRRRR  60
CERMPPPRAA TPDVAGDESS GADAGAGEIM LFGVRVVVDS MRKCVSLNNL SQYQHPQDAN  120
PPNASGGSGG NKEEAAKGYA SADDAAHNPG GGRERKRGVP WTEEEHRLFL LGLQKVGKGD  180
WRAISRNFVK TRTPTQVASH AQKYFLRRSN LNRRRRRSSL FDITTDSVTA SMMETEHVPH  240
QDNTYQMNPL PRHPLLQDTC NPNGYVAMAP FAMPIGPAAF PIPVQNQVPN LTLMQGGGLS  300
DSKSKLVQPT PLVPIPHAPL TSDQSANSKS TMEPLSLSLN LSLPSDQGDS PSSRTSFQAM  360
SGFRGGESII SVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02897.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037617.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B01e-73MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A059A5G00.0A0A059A5G0_EUCGR; Uncharacterized protein
STRINGXP_010037617.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-46MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]