PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K02854.1.p

Common Name

EUGRSUZ_K02854, LOC104427821

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 188aa MW: 21240.5 Da PI: 10.1291

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K02854.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	15	65	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + E++RR r+N ++L +l+P+ ++++ l + L +A YI +L Eucgr.K02854.1.p 15 RKTLEKNRRIRMNILCSKLASLIPQhHITTSKESLPRQDQLDQAASYITQL 65 5789*******************554555555*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.55	10	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-9	12	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-10	13	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0036	16	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-6	16	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MNKSTSNNQS LKVERKTLEK NRRIRMNILC SKLASLIPQH HITTSKESLP RQDQLDQAAS 60 YITQLKERID GLKLRKEQAV LQSEGIDTSS SLTSSIDQKA KLGFVPPVFQ LRDHGLGLEV 120 ILISGRRKNF MLYEVIRILE EEGAEVVSAS FSVVGDKIFH TLNAQVRLCR VGVETTRVYE 180 RLKELIH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K02854.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010039149.1	1e-135	PREDICTED: uncharacterized protein LOC104427821
TrEMBL	A0A059A6I7	1e-133	A0A059A6I7_EUCGR; Uncharacterized protein
STRING	XP_010039149.1	1e-134	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K02854.1.p
Entrez Gene	104427821