PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02752.1.p
Common NameEUGRSUZ_K02752
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 452aa    MW: 49784 Da    PI: 7.4593
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02752.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS132.64.4e-411052902181
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svs....elykalppsetseknsseelaalklfsevsP 89 
                        +lL++cAeav+ +d+ +a++lL++l+ +a   g+++qR+a++f+++La rl+  +       ++ a+ + ++     +e+  al+l ++++P
  Eucgr.K02752.1.p 105 LQLLVACAEAVACRDKLQASSLLSELRSRALVFGTSFQRVASCFVQGLADRLSLlQPLgtlgFISPAVVAAASGAAAPDEKEEALRLAYKICP 197
                       699************************************************98733221111344444455555555999999********** PP

              GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                       +++f+h++aN  Ilea+ege+ vH++D+++s Gl    QW  L+q+La R ++pp +lRiT++g     s+e+  ++g+ L+ +A ++g++++
  Eucgr.K02752.1.p 198 YIQFGHFVANTSILEAFEGENFVHVVDLGMSLGLpgghQWRRLIQSLAGRHGQPPrRLRITAIGL----SAEKFCSIGDELSAYALNFGINLD 286
                       *****************************998644444*************777779********....9*********************99 PP

              GRAS 178 fnvl 181
                       +  l
  Eucgr.K02752.1.p 287 ILQL 290
                       8665 PP
2GRAS180.21.5e-55288450208374
              GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                       lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl++ lp+ +  r+kvE++++++ei+n+v+c
  Eucgr.K02752.1.p 288 LQLHCVVKESRGALN---SVLQMIHNLSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRRAKVEQFYFAEEIKNIVSC 377
                       577877766665555...8************************************************************************** PP

              GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       eg +r+erhe++ +Wr+r+++aGF+ +p++  +++qak  l k k  +gy+v ee+g+lvlgW+++p+v++S+W+
  Eucgr.K02752.1.p 378 EGPARVERHERVDQWRRRMTRAGFQLAPIK--MMAQAKQWLGKNKvCEGYTVVEEKGCLVLGWNSKPIVAASCWK 450
                       ****************************96..789**********9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.56678431IPR005202Transcription factor GRAS
PfamPF035145.2E-53288450IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MLVYCDPEEE EEARGKKRPK RTYSFAESIG SNSPRAYTGG FGSGGISRSS SMSSLDTFPR  60
LHFRDHIWTY SQQYVAVEAV EEAAAAVSVG GGEEEDGTAD GMRLLQLLVA CAEAVACRDK  120
LQASSLLSEL RSRALVFGTS FQRVASCFVQ GLADRLSLLQ PLGTLGFISP AVVAAASGAA  180
APDEKEEALR LAYKICPYIQ FGHFVANTSI LEAFEGENFV HVVDLGMSLG LPGGHQWRRL  240
IQSLAGRHGQ PPRRLRITAI GLSAEKFCSI GDELSAYALN FGINLDILQL HCVVKESRGA  300
LNSVLQMIHN LSPKVLVLVE QDSSHNGPFF LGRFMEALHY YSAIFDSLDV MLPKYDTRRA  360
KVEQFYFAEE IKNIVSCEGP ARVERHERVD QWRRRMTRAG FQLAPIKMMA QAKQWLGKNK  420
VCEGYTVVEE KGCLVLGWNS KPIVAASCWK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5311144926378Protein SCARECROW
5b3h_A3e-5311144925377Protein SCARECROW
5b3h_D3e-5311144925377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02752.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039137.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A059A5Q60.0A0A059A5Q6_EUCGR; Uncharacterized protein
STRINGXP_010039137.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16018814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-63GRAS family protein