PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02711.1.p
Common NameEUGRSUZ_K02711
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 299aa    MW: 34072.4 Da    PI: 10.3068
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02711.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-2697147151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       krie  s rqvtfskRrng++KKA+ELSvLCdae+a+++fss+gk y ++s
  Eucgr.K02711.1.p  97 KRIEKASSRQVTFSKRRNGLFKKAFELSVLCDAEIALLVFSSSGKCYQFAS 147
                       79***********************************************86 PP
2K-box67.73.8e-231712591098
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         + ae ++ e+  L + ie+++ +++hl GedL+ L +keL+qLe+qL+++++++RskK +++ e ++ l++  + lqeen +L k +
  Eucgr.K02711.1.p 171 GCRSAEFWRAEIHELTRGIETMEAQLKHLCGEDLSMLGVKELRQLERQLKTGVERVRSKKRRIISEGVNLLKRNLRVLQEENARLLKTV 259
                       344579******************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-3989148IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.45589149IPR002100Transcription factor, MADS-box
CDDcd002651.76E-3890159No hitNo description
SuperFamilySSF554551.83E-3090172IPR002100Transcription factor, MADS-box
PROSITE patternPS00350091145IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-2891111IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2598145IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28111126IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-28126147IPR002100Transcription factor, MADS-box
PfamPF014861.4E-20173259IPR002487Transcription factor, K-box
PROSITE profilePS5129713.212175267IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MPSNAPTSYA FMHIAAAPDF IYMCNRNGSS FLPYSPACIG TLFFFLPIRF HLAIPIQRKK  60
TNIDLKLSFF VVGLVWFFGF QDPIESKRMG RGKVELKRIE KASSRQVTFS KRRNGLFKKA  120
FELSVLCDAE IALLVFSSSG KCYQFASHDM DRTIVKYRDE LGLPQSSQNQ GCRSAEFWRA  180
EIHELTRGIE TMEAQLKHLC GEDLSMLGVK ELRQLERQLK TGVERVRSKK RRIISEGVNL  240
LKRNLRVLQE ENARLLKTVK FQEMHSVNIR PGAFVDRSFN PDQRVPEDGS SSMVNGGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A6e-2389169180MEF2 CHIMERA
6bz1_B6e-2389169180MEF2 CHIMERA
6bz1_C6e-2389169180MEF2 CHIMERA
6bz1_D6e-2389169180MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02711.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037401.20.0PREDICTED: MADS-box transcription factor 23 isoform X2
TrEMBLA0A059A5K10.0A0A059A5K1_EUCGR; Uncharacterized protein
STRINGXP_010037400.11e-118(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-43AGAMOUS-like 16