PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02595.1.p
Common NameEUGRSUZ_K02595, LOC104426061
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 274aa    MW: 30403.7 Da    PI: 8.1554
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02595.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.8e-171153345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      i n+  r +t+ kR++g++KKA+E  +LC+++ ++ii+++ g 
  Eucgr.K02595.1.p 11 ITNEKARRITYEKRKKGMMKKAQEFTTLCGVDTCMIIYGPAGS 53
                      899*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.6E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.759152IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-19297IPR002100Transcription factor, MADS-box
CDDcd002662.26E-22289No hitNo description
PRINTSPR004042.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-171153IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRRKLVLEL ITNEKARRIT YEKRKKGMMK KAQEFTTLCG VDTCMIIYGP AGSAATTEPE  60
IWPASPEKVK CIIERYMSKG VDRRAKRMVG LPEFFADRNR KVNAELAKVR LANREAKYPI  120
SEALIDGLSE EDMRRLLGSL GHKLEAAKAR LAVMKEDAMR RSSSFMNDHN LPANDHTYNH  180
HHHMPCSCEN HFPPGQDFHF AIPEGTMLSE TSLYGPIIGN VSSEGTPSFG ACYDALMVQP  240
APPHAALGDA GRSNPAPDDA GFFAGNHQFH DYQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02595.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037296.10.0PREDICTED: agamous-like MADS-box protein AGL82
RefseqXP_018720655.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A059A6L70.0A0A059A6L7_EUCGR; Uncharacterized protein
STRINGXP_010037296.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-26AGAMOUS-like 82