PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02545.1.p
Common NameEUGRSUZ_K02545, LOC104426034
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 552aa    MW: 59583.3 Da    PI: 7.295
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02545.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-40177252277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rL+ hnerrrk++
  Eucgr.K02545.1.p 177 CQVFGCNKDLSSSKDYHKRHKVCEVHSKTAQVVVNGVEQRFCQQCSRFHLLAEFDDGKRSCRKRLSVHNERRRKPH 252
                       **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-31173238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.795174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-37175254IPR004333Transcription factor, SBP-box
PfamPF031104.9E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MESWSYFSEG KALVSDEPVS PFDLLGRSKN AVANWELRSP PSFGNSVVVS GQEAEVGQGF  60
GQLGFQEIIR KQVHPKSPRH VLTDKFDDGN GANQILAALD SFGGEDESTS NLSVSGVDSN  120
TQDSLLIDLK LGRFGESREV PGAKFPQGGK KVLSSSESST PPKRARSVGA NCHTHYCQVF  180
GCNKDLSSSK DYHKRHKVCE VHSKTAQVVV NGVEQRFCQQ CSRFHLLAEF DDGKRSCRKR  240
LSVHNERRRK PHVGVQSGSV GRMLQSYNGS GLERNLLAPT SFLCQDTLAG EKFLNSGPYG  300
MNNWYEHIKA EDGIGLGPPS AIPTPNRHPN AISLISPYKF ERQFALFDGG RVKSTASGIS  360
SKNNQVPREL GGQNSSHSSF QNTSFGSEDF AVFDTASTVQ GISGIIESGR ALSLLSSLSQ  420
NSSSHSRIPM AQSLVMAGTD YHFSLCGATD KLVDMSSHAS VGVELKKLSS SVMDSAERNL  480
PGHPLVSDLE ISDGILGGSG FVNSKDNLSP EGGATTMNLL QLSSQLQRVE DQRQSIHLKE  540
QNDVFGCHSI T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271772501184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02545.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037257.10.0PREDICTED: squamosa promoter-binding-like protein 18
TrEMBLA0A059A5F60.0A0A059A5F6_EUCGR; Uncharacterized protein
STRINGXP_010037257.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14770918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-42SBP family protein