PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02448.2.p
Common NameEUGRSUZ_K02448, LOC104425958
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 268aa    MW: 30521.7 Da    PI: 4.5405
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02448.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-194093356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k++++t+eq++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Eucgr.K02448.2.p 40 KKRRLTTEQVHFLEKNFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 93
                      56789************************************************9 PP
2HD-ZIP_I/II125.81.9e-4039129191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       ekkrrl++eqv++LE++Fe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktk+lEk+ye L+++y++lk++ + L ke+++L++e+
  Eucgr.K02448.2.p  39 EKKRRLTTEQVHFLEKNFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKHLEKEYEDLQASYNSLKADCDGLLKENDKLKTEV 129
                       69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-202996IPR009057Homeodomain-like
PROSITE profilePS5007117.5723595IPR001356Homeobox domain
SMARTSM003891.1E-183899IPR001356Homeobox domain
PfamPF000461.3E-164093IPR001356Homeobox domain
CDDcd000861.52E-174096No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1941102IPR009057Homeodomain-like
PRINTSPR000311.0E-56675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000311.0E-57591IPR000047Helix-turn-helix motif
PfamPF021832.5E-1295136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVSFEDASGA NVSKNPFFQA FDPHEIGEEE LDEYLHQPEK KRRLTTEQVH FLEKNFELEN  60
KLEPERKIQL AKDLGLQPRQ VAIWFQNRRA RWKTKHLEKE YEDLQASYNS LKADCDGLLK  120
ENDKLKTEVL VLTDKLLIKA RGTQNSKLSN ASSPGPPENP VACSKGEEER ISTVPEDVCP  180
GKSEISDSDS PNGGYSPLRE HGDSSYAFEP DLSDSSQDED YTRNENLQHL CVFPKLEETR  240
DDYPILSTSS CHFGFPPEDQ ASWPWPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02448.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037142.10.0PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A059A4S30.0A0A059A4S3_EUCGR; Uncharacterized protein
STRINGXP_010037142.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-35homeobox 1